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pyrrolysine



Improved pyrrolysine biosynthesis through phage assisted non-continuous directed evolution of the complete pathway Joanne M. L. Ho, Corwin A. Miller, Kathryn A. Smith, Jacob R. Mattia, Matthew R. Bennett Nat Commun. 2021; 12: 3914. Published online 2021 Jun 24. doi: 10.1038/s41467-021-24183-9 PMCID: PMC8225853
Live Cell Imaging of Bioorthogonally Labelled Proteins Generated With a Single Pyrrolysine tRNA Gene Noa Aloush, Tomer Schvartz, Andres I. König, Sarit Cohen, Eugene Brozgol, Benjamin Tam, Dikla Nachmias, Oshrit Ben-David, Yuval Garini, Natalie Elia, Eyal Arbely Sci Rep. 2018; 8: 14527. Published online 2018 Sep 28. doi: 10.1038/s41598-018-32824-1 PMCID: PMC6162220
Orthogonality of Pyrrolysine tRNA in the Xenopus oocyte Daniel T. Infield, John D. Lueck, Jason D. Galpin, Grace D. Galles, Christopher A. Ahern Sci Rep. 2018; 8: 5166. Published online 2018 Mar 26. doi: 10.1038/s41598-018-23201-z PMCID: PMC5980078
Designer tRNAs for efficient incorporation of non-canonical amino acids by the pyrrolysine system in mammalian cells Robert Serfling, Christian Lorenz, Maja Etzel, Gerda Schicht, Thore Böttke, Mario Mörl, Irene Coin Nucleic Acids Res. 2018 Jan 9; 46(1): 1–10. Published online 2017 Nov 21. doi: 10.1093/nar/gkx1156 PMCID: PMC5758916
Corrigendum to “Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette” Guillaume Borrel, Nadia Gaci, Pierre Peyret, Paul W. O'Toole, Simonetta Gribaldo, Jean-François Brugère Archaea. 2015; 2015: 941836. Published online 2015 Feb 2. doi: 10.1155/2015/941836Corrects: Archaea. 2014; 2014: 374146. PMCID: PMC4333192
Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine Guillaume Borrel, Nicolas Parisot, Hugh MB Harris, Eric Peyretaillade, Nadia Gaci, William Tottey, Olivier Bardot, Kasie Raymann, Simonetta Gribaldo, Pierre Peyret, Paul W O’Toole, Jean-François Brugère BMC Genomics. 2014; 15: 679. Published online 2014 Aug 13. doi: 10.1186/1471-2164-15-679 PMCID: PMC4153887
Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette Guillaume Borrel, Nadia Gaci, Pierre Peyret, Paul W. O'Toole, Simonetta Gribaldo, Jean-François Brugère Archaea. 2014; 2014: 374146. Published online 2014 Jan 27. doi: 10.1155/2014/374146Correction in: Archaea. 2015; 2015: 941836. PMCID: PMC3941956
Effects of using coding potential, sequence conservation and mRNA structure conservation for predicting pyrrolysine containing genes Christian Theil Have, Sine Zambach, Henning Christiansen BMC Bioinformatics. 2013; 14: 118. Published online 2013 Apr 4. doi: 10.1186/1471-2105-14-118 PMCID: PMC3639795
PylSn and the Homologous N-terminal Domain of Pyrrolysyl-tRNA Synthetase Bind the tRNA That Is Essential for the Genetic Encoding of Pyrrolysine Ruisheng Jiang, Joseph A. Krzycki J Biol Chem. 2012 Sep 21; 287(39): 32738–32746. Published online 2012 Jul 31. doi: 10.1074/jbc.M112.396754 PMCID: PMC3463324
An Asymmetric Synthesis of L-Pyrrolysine Margaret L. Wong, Ilia A. Guzei, Laura L. Kiessling Org Lett. Author manuscript; available in PMC 2013 Mar 16.Published in final edited form as: Org Lett. 2012 Mar 16; 14(6): 1378–1381. Published online 2012 Mar 6. doi: 10.1021/ol300045c PMCID: PMC3326344
Functional context, biosynthesis, and genetic encoding of pyrrolysine Marsha A. Gaston, Ruisheng Jiang, Joseph A. Krzycki Curr Opin Microbiol. Author manuscript; available in PMC 2012 Jun 1.Published in final edited form as: Curr Opin Microbiol. 2011 Jun; 14(3): 342–349. Published online 2011 May 5. doi: 10.1016/j.mib.2011.04.001 PMCID: PMC3119745
The Pyrrolysine Translational Machinery as a Genetic-Code Expansion Tool Tomasz Fekner, Michael K. Chan Curr Opin Chem Biol. Author manuscript; available in PMC 2012 Nov 2.Published in final edited form as: Curr Opin Chem Biol. 2011 Jun; 15(3): 387–391. Published online 2011 Apr 19. doi: 10.1016/j.cbpa.2011.03.007 PMCID: PMC3487393
The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine Marsha A. Gaston, Liwen Zhang, Kari B. Green-Church, Joseph A. Krzycki Nature. Author manuscript; available in PMC 2011 Sep 30.Published in final edited form as: Nature. 2011 Mar 31; 471(7340): 647–650. doi: 10.1038/nature09918 PMCID: PMC3070376
Selenocysteine, Pyrrolysine, and the Unique Energy Metabolism of Methanogenic Archaea Michael Rother, Joseph A. Krzycki Archaea. 2010; 2010: 453642. Published online 2010 Aug 17. doi: 10.1155/2010/453642 PMCID: PMC2933860
N6-(2-(R)-Propargylglycyl)lysine as a Clickable Pyrrolysine Mimic Xin Li, Dr. Tomasz Fekner, Prof. Michael K. Chan Chem Asian J. Author manuscript; available in PMC 2012 Dec 7.Published in final edited form as: Chem Asian J. 2010 Aug 2; 5(8): 1765–1769. doi: 10.1002/asia.201000205 PMCID: PMC3517070
Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems Jing Yuan, Patrick O’Donoghue, Alex Ambrogelly, Sarath Gundllapalli, R. Lynn Sherrer, Sotiria Palioura, Miljan Simonović, Dieter Söll FEBS Lett. Author manuscript; available in PMC 2011 Jan 21.Published in final edited form as: FEBS Lett. 2010 Jan 21; 584(2): 342–349. doi: 10.1016/j.febslet.2009.11.005 PMCID: PMC2795046
The appearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution Ilka U. Heinemann, Patrick O'Donoghue, Catherine Madinger, Jack Benner, Lennart Randau, Christopher J. Noren, Dieter Söll Proc Natl Acad Sci U S A. 2009 Dec 15; 106(50): 21103–21108. Published online 2009 Nov 24. doi: 10.1073/pnas.0912072106 PMCID: PMC2795538
Translation termination in pyrrolysine-utilizing archaea Elena Alkalaeva, Boris Eliseev, Alexandre Ambrogelly, Peter Vlasov, Fyodor A. Kondrashov, Sharath Gundllapalli, Lyudmila Frolova, Dieter Söll, Lev Kisselev FEBS Lett. Author manuscript; available in PMC 2010 Apr 21.Published in final edited form as: FEBS Lett. 2009 Nov 3; 583(21): 3455–3460. Published online 2009 Sep 29. doi: 10.1016/j.febslet.2009.09.044 PMCID: PMC2857517
Misacylation of pyrrolysine tRNA in vitro and in vivo Sarath Gundllapalli, Alexandre Ambrogelly, Takuya Umehara, Darrick Li, Carla Polycarpo, Dieter Söll FEBS Lett. Author manuscript; available in PMC 2009 Oct 15.Published in final edited form as: FEBS Lett. 2008 Oct 15; 582(23-24): 3353–3358. Published online 2008 Sep 5. doi: 10.1016/j.febslet.2008.08.027 PMCID: PMC2577721
High content of proteins containing 21st and 22nd amino acids, selenocysteine and pyrrolysine, in a symbiotic deltaproteobacterium of gutless worm Olavius algarvensis Yan Zhang, Vadim N. Gladyshev Nucleic Acids Res. 2007 Aug; 35(15): 4952–4963. Published online 2007 Jul 11. doi: 10.1093/nar/gkm514 PMCID: PMC1976440
Pyrrolysine is not hardwired for cotranslational insertion at UAG codons Alexandre Ambrogelly, Sarath Gundllapalli, Stephanie Herring, Carla Polycarpo, Carina Frauer, Dieter Söll Proc Natl Acad Sci U S A. 2007 Feb 27; 104(9): 3141–3146. Published online 2007 Feb 20. doi: 10.1073/pnas.0611634104 PMCID: PMC1805618
Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense pyrrolysyl-tRNA synthetase Stephanie Herring, Alexandre Ambrogelly, Carla R. Polycarpo, Dieter Söll Nucleic Acids Res. 2007 Feb; 35(4): 1270–1278. Published online 2007 Jan 31. doi: 10.1093/nar/gkl1151 PMCID: PMC1851642
A natural genetic code expansion cassette enables transmissible biosynthesis and genetic encoding of pyrrolysine David G. Longstaff, Ross C. Larue, Joseph E. Faust, Anirban Mahapatra, Liwen Zhang, Kari B. Green-Church, Joseph A. Krzycki Proc Natl Acad Sci U S A. 2007 Jan 16; 104(3): 1021–1026. Published online 2007 Jan 4. doi: 10.1073/pnas.0610294104 PMCID: PMC1783357
Pyrrolysine analogues as substrates for pyrrolysyl-tRNA synthetase Carla R. Polycarpo, Stephanie Herring, Amélie Bérubé, John L. Wood, Dieter Söll, Alexandre Ambrogelly FEBS Lett. Author manuscript; available in PMC 2007 Mar 8.Published in final edited form as: FEBS Lett. 2006 Dec 11; 580(28-29): 6695–6700. Published online 2006 Nov 20. doi: 10.1016/j.febslet.2006.11.028 PMCID: PMC1817836
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine Carla Polycarpo, Alexandre Ambrogelly, Amélie Bérubé, SusAnn M. Winbush, James A. McCloskey, Pamela F. Crain, John L. Wood, Dieter Söll Proc Natl Acad Sci U S A. 2004 Aug 24; 101(34): 12450–12454. Published online 2004 Aug 16. doi: 10.1073/pnas.0405362101 PMCID: PMC515082
Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA Anne Théobald-Dietrich, Magali Frugier, Richard Giegé, Joëlle Rudinger-Thirion Nucleic Acids Res. 2004; 32(3): 1091–1096. Published online 2004 Feb 10. doi: 10.1093/nar/gkh266 PMCID: PMC373401
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